PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g15060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 155aa    MW: 16831.1 Da    PI: 5.1055
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g15060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.21.2e-073312255
                     HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      L+ l+P++      K +Ka++L +A+eY+k+Lq
  Vradi06g15060.1  3 ALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 31
                     699999997.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.7E-11141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-8135No hitNo description
PROSITE profilePS5088811.928130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-10241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-5331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MKALQNLIPN SNKTDKASML DEAIEYLKQL QLQVQMLMMR NGLSLHPMSL PGELRPVIMP  60
QTGLNLDESD GLQNSTSAIA SSSNEESLVR HAFSFPKQCS ISDQSHVVPS VTSLATSNAP  120
STFHPSIKDT LYDNMPQLFM DAPKIGKDPS SDLS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-148AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014504099.11e-107PREDICTED: transcription factor ALC-like isoform X1
SwissprotQ9FUA41e-27SPT_ARATH; Transcription factor SPATULA
TrEMBLA0A0L9V1M41e-105A0A0L9V1M4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RPW61e-105A0A0S3RPW6_PHAAN; Uncharacterized protein
STRINGGLYMA14G09231.11e-83(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.18e-19bHLH family protein